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Salary#127950 Bioinformatics Programmer
Filing Deadline: Mon 2/19/2024UC San Diego values equity, diversity, and inclusion. If you are interested in being part of our team, possess the needed licensure and certifications, and feel that you have most of the qualifications and/or transferable skills for a job opening, we strongly encourage you to apply.
UCSD Layoff from Career Appointment: Apply by 02/08/2024 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor.
Special Selection Applicants: Apply by 02/19/2024 Eligible Special Selection clients should contact their Disability Counselor for assistance.
This position will work a hybrid schedule which includes a combination of working both onsite at UCSD Campus and remote.
Depending on the experience of the selected candidate, this position will be hired at the 9403 - BIOINFORMATICS PROGR 1 or 9402 - BIOINFORMATICS PROGR 2 level.
DESCRIPTION
The mission of the UCSD Center for Epigenomics is to develop a quantitative and molecular framework to study the function and regulation of the human genome, with the ultimate goal to understand the molecular basis of cancer and other human diseases. Epigenomics is at the forefront of Precision Medicine. The epigenome, a term referring to the state of DNA methylation and the covalent modifications of histone proteins in a cell, plays a central role in regulating the functional output of the genome during development. Changes in the epigenome that result from exposure to stress, pathogenic conditions and during aging can determine the patterns of gene expression and predispose an individual to diseases. Epigenome research promises to significantly improve our understanding of the factors that drive human development and disease. The UCSD Center for Epigenomics will work with researchers on the UCSD campus and beyond to foster the application of epigenomic concepts and technologies to clinical, translational, and basic research.
Under the direction of its Senior Associate Director, the incumbent will help in implementing, running, customizing, and optimizing data analysis pipelines for genomic and epigenomic assays such as single cell RNA-seq and single cell ATAC-seq. The incumbent will help to perform integrative data analysis and assist to prepare results for oral presentation, scientific publications, and grant applications.
CT - Under direct supervision, applies professional bioinformatics concepts and computational procedures to complete small projects or portions of projects. Works on assignments of limited scope and complexity. Follows standard programming procedures to analyze situations and data from which answers can be readily obtained.
MINIMUM QUALIFICATIONS
Bioinformatics 1 Level - Four years of relevant experience or a Bachelor's degree in biological science, computational / programming, or related area and /or equivalent experience / training.
Bioinformatics 2 Level - Six years of relevant experience or a Bachelor's degree in biological science, computational / programming, or related area and / or equivalent experience / training plus two or more years of relevant experience.
Basic knowledge of bioinformatics methods and data structures.
Basic knowledge of applications programming and web development.
Basic knowledge of databases.
Basic project management skills. Excellent organizational, problem solving, and analytical skills, and attention to detail.
Basic knowledge of modern biology and applicable field of research.
Interpersonal skills in order to work with both technical and non-technical personnel at various levels in the organization.
Ability to communicate technical information in a clear and concise manner. Experience with science outreach, teaching, and websites (e.g. Wordpress) a plus.
Self motivated, able to learn quickly, meet deadlines and demonstrate problem solving skills. Ability to effectively prioritize workload and meet deadlines despite interruptions and competing demands.
Basic knowledge of application and data security concepts.
Basic knowledge in genomics, biostatistics, molecular biology, and/or genetics.
Ability to work in a dynamic "startup" atmosphere.
Basic knowledge in analyzing next generation sequencing data. Experience with single cell genomics data like single cell RNA-seq, single cell ATAC-seq or single cell DNA methylation data is a plus.
Basic knowledge in statistics and programming languages such as Python, Perl, R, and Bash. Proficiency in commonly used tools for NGS analysis and visualization such as STAR, HOMER, Rshiny, etc. Proficiency in running analysis on an HPC. Proficiency with relational databases and programming languages used in the development of web-based MIS systems is a plus plus (e.g. SQL Server, HTML).
SPECIAL CONDITIONS
Job offer is contingent upon satisfactory clearance based on Background Check results.
Occasional holidays, weekends, evenings, nights, and on-call may be required
Pay Transparency Act
Annual Full Pay Range: $67,200 - $119,600 (will be prorated if the appointment percentage is less than 100%)
Hourly Equivalent: $32.18 - $57.28
Factors in determining the appropriate compensation for a role include experience, skills, knowledge, abilities, education, licensure and certifications, and other business and organizational needs. The Hiring Pay Scale referenced in the job posting is the budgeted salary or hourly range that the University reasonably expects to pay for this position. The Annual Full Pay Range may be broader than what the University anticipates to pay for this position, based on internal equity, budget, and collective bargaining agreements (when applicable).
If employed by the University of California, you will be required to comply with our Policy on Vaccination Programs, which may be amended or revised from time to time. Federal, state, or local public health directives may impose additional requirements.
If applicable, life-support certifications (BLS, NRP, ACLS, etc.) must include hands-on practice and in-person skills assessment; online-only certification is not acceptable.
UC San Diego Health Sciences is comprised of our School of Medicine, Skaggs School of Pharmacy and Pharmaceutical Sciences, The Herbert Wertheim School of Public Health and Human Longevity Science, and our Student Health and Well-Being Department. We have long been at the forefront of translational - or "bench-to-bedside" - research, transforming patient care through discovery and innovation leading to new drugs and technologies. Translational research is carried out every day in the hundreds of clinical trials of promising new therapies offered through UC San Diego Health, and in the drive of our researchers and clinician-scientists who are committed to having a significant impact on patient care. We invite you to join our team!
Applications/Resumes are accepted for current job openings only. For full consideration on any job, applications must be received prior to the initial closing date. If a job has an extended deadline, applications/resumes will be considered during the extension period; however, a job may be filled before the extended date is reached.
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UC San Diego Health is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, disability, age, protected veteran status, gender identity or sexual orientation. For the complete University of California nondiscrimination and affirmative action policy see: http://www-hr.ucsd.edu/saa/nondiscr.html
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UC San Diego Health maintains a marijuana and drug free environment. Employees may be subject to drug screening.
